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Changed: now 13:15 GMT
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AddYourOwnLinks
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07 Nov 2006 - 21:14 - r1.24
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IanHolmes
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your own links // Main.BioWikis, Main.BioBlogs (fairly fluid list of wiki/blog sites in biology) // bio projects (free software hubs in bioinformatics) // wikis, blogs (very incomplete lists) // mailing lists (skeletal, please add...) // conferences; prizes // JournalFeeds (recent articles from compbio and biology journals) // (Click the Edit link to add a link to this list, or go to one of the subpages and edit those...) //
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AhmedHimel
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06 Dec 2005 - 22:19 - NEW
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TWikiGuest
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// Email: Ahmed@negativenumber.net // Name: Ahmed Himel // Company URL: http://negativenumber.net // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AhmedHimelSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 ...
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AjaxProgrammerJob
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29 Aug 2008 - 15:02 - r1.83
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IanHolmes
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// ATTENTION: the job has now been filled. Thanks for your interest. // // Wanted: Programmer, full-time, for Web 2.0 Genome Browser // We're bringing the power of social networking to the genome project. // Help make a contribution to the greatest scientific endeavour of all time! // // Project description // The AJAX technologies incorporated in Google Maps have further // augmented the user experience and seeded a burst of community map // annotation efforts ...
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AlannaConnell
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14 Sep 2009 - 21:00 - NEW
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TWikiGuest
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// Name: Alanna Connell // Email: Alannersugarface@yahoo.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AlannaConnellSandbox just for me // Related topics // Main.ChangePassword //
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AlbertVilella
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04 Apr 2006 - 04:29 - NEW
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TWikiGuest
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// Name: Albert Vilella // Email: avilella@gmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AlbertVilellaSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box ...
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AleoMok
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11 Sep 2009 - 17:23 - r1.21
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AleoMok
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Name: Aleo Mok // Email: aleo.mok@gmail.com // Comment: website for BioE 131 // (unable to attach a picture because of website restriction) // A Few Things About Myself // Hi, my name is Aleo Mok. I am currently a sophomore at UC Berkeley with a Bioengineering Major with computational emphasis. (I am also considering doubling/tripling in EECS, but that's another story). I was actually born in Berkeley, but I moved away when I was just a wee little kid...and ...
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AlexA
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08 Feb 2007 - 06:04 - NEW
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TWikiGuest
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// Location: NevisResearchBuilding // Office: 12 // University: Fiziq // Nevis Group: Atlas // First Name: AlexA // Last Name: AlexA // Email: AlexA@allado.info // Organisation Name: // Organisation URL: strider // Country: Italy // Comment: This guglL:ggl This yahoo: ggddl // Chapter: Other // Gpg Key: AlexA // Name: AlexA // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AlexASandbox just for me // // // Personal ...
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AlexBroot
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13 Oct 2006 - 02:20 - NEW
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TWikiGuest
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// Name: Alex Broot // Email: alexsantr@yahoo.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AlexBrootSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // ...
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AlexPhan
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10 Nov 2006 - 18:12 - NEW
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TWikiGuest
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// Name: Alex Phan // Email: alexander.phan@gmail.com // Comment: working on an AJAX research-animal tracking tool.... // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AlexPhanSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set ...
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AlexisAvitia
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03 Nov 2005 - 23:08 - NEW
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TWikiGuest
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// Email: Alexis@johan-gauss.org // Name: Alexis Avitia // Company URL: http://johan-gauss.org // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AlexisAvitiaSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 / ...
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AliceFornari
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10 Jul 2009 - 06:37 - NEW
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TWikiGuest
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// Name: Alice Fornari // Email: alicefornari@gmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AliceFornariSandbox just for me // Related topics // Main.ChangePassword //
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AlisaBokova
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18 Jul 2006 - 00:50 - NEW
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TWikiGuest
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// Name: Alisa Bokova // Email: Alisa23@xxxextrim.com // Comment: udachi v novom godu! // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AlisaBokovaSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical ...
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AllisonBerke
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10 Apr 2009 - 12:41 - r1.5
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IanHolmes
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// Name: Allison Berke // Email: berke@berkeley.edu // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AllisonBerkeSandbox just for me // 1. About Me // I am a first year BioE Ph.D. student in the Joint UCSF/UC Berkeley program. My background is in mathematics and biology at MIT, and I am interested in fluid dynamics, electron tunneling in proteins and enzymes, computational biology, and making artificial ...
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AnanR
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23 Jan 2006 - 18:31 - NEW
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TWikiGuest
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// Name: Anandhi Ramachandran // Email: anandrama05@rediffmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AnanRSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text ...
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AndreasHeger
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11 Sep 2006 - 16:28 - r1.4
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AndreasHeger
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Name: Andreas Heger // Email: andreas.heger@helsinki.fi // Comment: in ChrisPonting's group // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AndreasHegerSandbox just for me // AndreasHegerLabJournal // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set ...
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AndrewCrawford
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25 Mar 2005 - 06:29 - r1.3
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TWikiGuest
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Name: Andrew Crawford // Login Name: crawfordaj // Email: andrew@dna.ac // Phone: 011 507 212-8837 // Department: Smithsonian Tropical Research Institute // Location: Republic of Panama // Comment: Viva la Wiki! // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AndrewCrawfordSandbox just for me // homepage: http://dna.ac // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over ...
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AndrewUzilov
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04 Dec 2007 - 13:24 - r1.164
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AndrewUzilov
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Contact Information: // I have (sadly) departed the HolmesLab in September 2007 for the Bioinformatics !PhD program at UCSC. // My new web presence is here. // Publications: // Klosterman PS, Uzilov AV, Bendana YR, Bradley RK, Chao S, Kosiol C, Goldman N, Holmes I. XRate: a fast prototyping, training and annotation tool for phylo-grammars. BMC Bioinformatics (2006) 7 :428. // Uzilov AV, Keegan JM, Mathews DH. Detection of non-coding RNAs on the basis of predicted ...
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AndrewUzilovLinks
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23 Oct 2008 - 09:23 - r1.12
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IanHolmes
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// // Useful Links // This is mostly an attempt to keep track of !BioWiki stuff to which I contributed. // Also see: silly notes to self. // TODOs // Fix AndrewUzilovTopicMap (see Directed Graph Web Map Plugin for info) // Put a "comments" section in every page below, in case someone stumbles on it and wants to add a note, but is afraid to use the wiki edit function. // Lab Business // LabMeeting // JournalClub (on hiatus) // FoldingAtHome (go Team Holmes!) ...
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AngiChau
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06 Sep 2006 - 16:43 - r1.4
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YuriBendana
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Name: Angi Chau // Login Name: angichau // Email: angichau@berkeley.edu // Phone: // Department: Bioengineering // Location: UCSF Lim Lab // Comment: Graduate student and GSI of !BioE 131 in Fall 2005 // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AngiChauSandbox just for me // http://biowiki.org/ // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links ...
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AnnaBauer
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25 Oct 2007 - 07:51 - NEW
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TWikiGuest
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// Name: Anna Bauer // Email: anna.h.bauer@gmail.com // Comment: MSc in Biotechnology. Administrator of Biominewiki. // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AnnaBauerSandbox just for me // Related topics // Main.ChangePassword //
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AntonKux
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13 Jul 2006 - 07:40 - NEW
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TWikiGuest
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// Name: Anton Kux // Email: yi15o3@mail.ru // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AntonKuxSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // Set EDITBOXHEIGHT ...
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ArifHarmanci
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27 Feb 2006 - 07:05 - NEW
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TWikiGuest
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// Name: Arif Harmanci // Email: arharman@ece.rochester.edu // Comment: // Related topics // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.ArifHarmanciSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical ...
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ArthurEdwards
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21 Dec 2006 - 14:04 - NEW
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TWikiGuest
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// Name: Arthur Edwards // Email: edwarda@moffitt.usf.edu // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.ArthurEdwardsSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit ...
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ArthurYu
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10 Sep 2009 - 15:17 - r1.2
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ArthurYu
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Arthur's !BioWiki Page! // Intro // I like herbalism and computers and electronic music. // You can go here for my Fall 09 !BioE 131 page. // Fall09.ArthurYu // Main.ArthurYu 01 Sep 2009 //
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AsaWirapati
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28 Mar 2007 - 01:23 - NEW
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TWikiGuest
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// Name: Asa Wirapati // Email: pratyaksha.wirapati@isb-sib.ch // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.AsaWirapatiSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text ...
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BabylonCluster
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01 Apr 2009 - 18:48 - r1.74
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IanHolmes
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// // HolmesLab computing cluster (aka babylon ) // See also // HowToAddNewClusterUser // CentosAlternatives // ClusterMaintenanceLog // Software // See ClusterSoftware. // Compiling stuff on the cluster // See ClusterInstallPolicy. // Cluster-related sub-projects // TODO: update this! // ClusterRAID notes // JBrowse.GenerateTilesClusterBenchmarks // CentOS On Cluster // LegatoBackupSystem // Specifications // 23 nodes for general-purpose computation (dual-CPU ...
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BarbaraKryvko
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15 May 2009 - 09:33 - NEW
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TWikiGuest
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// Name: Barbara Kryvko // Email: barbara.kryvko@wellsfargoadvisors.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.BarbaraKryvkoSandbox just for me // Related topics // Main.ChangePassword //
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BellaBorovsky
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01 Jul 2009 - 04:43 - NEW
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TWikiGuest
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// Name: Bella Borovsky // Email: bella.borovsky@sial.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.BellaBorovskySandbox just for me // Related topics // Main.ChangePassword //
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BennyMckay
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06 Oct 2005 - 09:48 - NEW
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TWikiGuest
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// Email: Benny@dont-explode.com // Name: Benny Mckay // Company URL: http://dont-explode.com // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.BennyMckaySandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical ...
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BioBlogs
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29 Dec 2007 - 10:44 - r1.27
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IanHolmes
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Bio Blogs: computational (and other) biology weblogs. // Here are some compbio-related RSS feeds in OPML format for your RSS aggregator IanHolmes, 1/7/06. // The most up-to-date list is in the Main.BlogRoll page, copied here: // Here are some older links (some are now extinct) // Propeller Twist: RNA and Bioinformatics research and other interests // http://nodalpoint.org/ // http://slashdot.org/ // http://bioblogs.com/ // http://bioinformatics.org/ // http: ...
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BioWiki
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29 Apr 2009 - 20:23 - r1.144
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IanHolmes
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About Biowiki.org // biowiki.org is a server hosting various wikis, including // A lab notebook for the lab at the University of California, Berkeley; // A weblog for the Holmes lab; // A developers' wiki for JBrowse, the AJAX interface to the genome browser; // A teaching wiki for classes in the Department of Bioengineering at UC Berkeley. // Content of this site // Mostly, this site is a repository of ideas and content for the lab. // For example, you can ...
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BioWikis
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28 Nov 2007 - 08:59 - r1.45
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IanHolmes
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Bio wikis // A compilation of links to wiki webs for Bioinformatics, Computational Biology, Computational Chemistry, Structural Biology, Molecular and Cell Biology, Bioengineering and other areas of modern biological science. // Feel free to update the list. // Sites called "biowiki" // biowiki.org this site // biowiki.net and biowiki.com JongPark's sites // biodirectory.com/biowiki an extensive set of links to web servers and databases, references, etc. ...
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BioinformaticsWorkflows
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06 Mar 2007 - 10:40 - r1.41
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IanHolmes
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Bioinformatics workflows // Bioinformatics workflows can be approached in several ways. // Unix hackers often resort to make, // while computer scientists dream of more elegant approaches. // Meanwhile, projects like Taverna offer the beginnings of GUI-designed grid workflows. // Taverna // TomOinn leads development on // Taverna // (recently covered by Hublog, // Propeller Twist // and // Flags and Lollipops). // There's also a Taverna page on the Mygrid TWiki ...
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BiowikiAnonymousCvs
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02 Jan 2009 - 13:54 - r1.7
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IanHolmes
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Using Biowiki.org Anonymous CVS // Browsing and Downloading // You can browse our CVS using a web interface here. // To download via anonymous cvs, set the environment variable CVS RSH to ssh then // cvs z3 d :ext:anonymous@cvs.biowiki.org:/usr/local/cvs co modulename // where modulename is the module you want to check out. // Main.LarsBarquist 01 Mar 2008 //
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BiowikiBlogging
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12 Jan 2006 - 18:21 - r1.18
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IanHolmes
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BiowikiBlogging // Option 1: install blosxom. Elegant 444-line Perl script. // Blosxom website: http://www.blosxom.com/ // Plugins: // http://www.blosxom.com/plugins/ // TWiki plugins: // http://www.lathi.net/twiki-bin/view/Main/BlosxomAndTWiki // (bad links?) http://www.blosxom.com/plugins/general/twikirender.htm // Brainstorming re TWiki+blosxom at twiki.org: // http://twiki.org/cgi-bin/view/Codev/BlosxomWeblog // http://twiki.org/cgi-bin/view/Codev/TWikiBlosxom ...
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BradfordWilson
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31 Aug 2005 - 16:12 - NEW
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TWikiGuest
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// Name: Bradford Wilson // Login Name: bradfordwilson // Email: bradfordwilson@berkeley.edu // Phone: // Department: computer science // Location: SanFranciscoOffice // Comment: Fall 2005 BioE 131 student // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.BradfordWilsonSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or ...
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BraidenMarrinan
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03 Nov 2005 - 05:11 - NEW
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TWikiGuest
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// Email: Braiden@tea-traditions.org // Name: Braiden Marrinan // Company URL: http://tea-traditions.org // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.BraidenMarrinanSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH ...
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BrassPerfecto
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08 Feb 2007 - 13:19 - NEW
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TWikiGuest
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// Location: NevisResearchBuilding // Office: 12 // University: Fiziq // Nevis Group: Atlas // First Name: BrassPerfecto // Last Name: BrassPerfecto // Email: BrassPerfecto@allado.info // Organisation Name: // Organisation URL: PerWi1971 // Country: Italy // Comment: This guglL:ggl This yahoo: ggddl // Chapter: Other // Gpg Key: BrassPerfecto // Name: BrassPerfecto // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox ...
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BrianLin
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05 Oct 2005 - 16:11 - NEW
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TWikiGuest
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// Name: Brian Lin // Email: blinster@berkeley.edu // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.BrianLinSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // ...
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CaseyB
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09 Oct 2008 - 11:31 - NEW
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TWikiGuest
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// Name: Casey B // Email: casey.bergman@manchester.ac.uk // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.CaseyBSandbox just for me // Related topics // Main.ChangePassword //
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CaycePollard
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13 Apr 2006 - 18:10 - r1.2
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IanHolmes
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Name: Cayce Pollard // Email: unknown // Comment: Good with patterns. // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.CaycePollardSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit ...
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CharlesKey
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15 Apr 2009 - 08:36 - NEW
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TWikiGuest
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// Name: Charles Key // Email: chazkey@aol.com // Comment: Travel Jobs with MyTravelJob.com a Travel Job. // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.CharlesKeySandbox just for me // Related topics // Main.ChangePassword //
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ChristopherVanBelle
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18 Nov 2005 - 16:45 - NEW
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TWikiGuest
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// Name: Christopher van Belle // Email: chris@compbio.berkeley.edu // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.ChristopherVanBelleSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical ...
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ClayBlaisdell
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11 Apr 2007 - 18:57 - NEW
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TWikiGuest
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// Name: Clay Blaisdell // Email: marshal@warlock.com // Comment: Sometimes a man can be too fast on the draw. // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.ClayBlaisdellSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH ...
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CristopherVadnais
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05 Jun 2006 - 08:35 - r1.2
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TWikiGuest
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... no changes ... no changes ... no changes ... no changes ... no changes ... no changes ... no changes ... no changes ... no changes ... no changes ... no changes ... // Email: Cristopher@johan-gauss.org // Name: Cristopher Vadnais // Company URL: http://johan-gauss.org // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.CristopherVadnaisSandbox just for me // // // Personal Preferences (details in .TWikiVariables ...
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DarenNuose
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13 Jul 2006 - 01:01 - NEW
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TWikiGuest
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// Name: Daren Nuose // Email: blackman@writeme.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.DarenNuoseSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: ...
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DarienStraight
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05 Nov 2005 - 22:21 - NEW
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TWikiGuest
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// Email: Darien@jasmin-tea.com.ru // Name: Darien Straight // Company URL: http://jasmin-tea.com.ru // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.DarienStraightSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH ...
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DavidCary
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13 Apr 2005 - 17:45 - NEW
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TWikiGuest
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// Name: David Cary // Login Name: DavidCary // Email: d.cary+biowiki.org@ieee.org // Phone: 918.813.2279 // Department: // Location: (Please specify office location) // Comment: interested in medical imaging, EEG, ECG. // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.DavidCarySandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links ...
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DavidRoches
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24 Aug 2009 - 12:19 - NEW
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TWikiGuest
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// Name: David Roches // Email: kluevmx@gmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.DavidRochesSandbox just for me // Related topics // Main.ChangePassword //
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DiegoAbam
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18 Jul 2006 - 04:21 - NEW
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TWikiGuest
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// Name: Diego Abam // Email: sotonone@gmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.DiegoAbamSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // Set ...
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DmitryNPopov
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27 Feb 2006 - 03:37 - NEW
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TWikiGuest
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// Name: Dmitry N // Email: exlusive@gmail.com // Company Name: // Company URL: // Country: USA // Comment: // Last Name: Popov // Related topics // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.DmitryNPopovSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal ...
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DopRovk
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18 Jul 2006 - 04:17 - NEW
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TWikiGuest
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// Name: Dop Rovk // Email: sotonone@gmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.DopRovkSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // Set EDITBOXHEIGHT ...
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DrestMont
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26 Feb 2006 - 09:41 - NEW
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TWikiGuest
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// Name: daniel restrepo-montoya // Email: drestmont@gmail.com // Comment: // Related topics // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.DrestMontSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical ...
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EliaStupka
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05 Sep 2006 - 04:15 - NEW
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TWikiGuest
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// Name: Elia Stupka // Email: elia.stupka@cbm.fvg.it // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.EliaStupkaSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box ...
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ErvinKirven
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02 Dec 2005 - 22:18 - NEW
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TWikiGuest
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// Email: Ervin@ennio-sounds.net // Name: Ervin Kirven // Company URL: http://ennio-sounds.net // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.ErvinKirvenSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // ...
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EvolutionarySoftwareFoundation
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19 Oct 2009 - 22:45 - r1.14
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IanHolmes
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Evolutionary Software Foundation // The Evolutionary Software Foundation (ESF) is a 501(c)(3) nonprofit corporation dedicated to promoting // scientific research into and public understanding of the theory of evolution and its implications, through development and maintenance of software (including but not limited to research tools, educational software and evolution-themed computer games), publications, websites, animations, lectures or otherwise. // Software ...
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FranckyColombo
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14 Feb 2008 - 07:37 - NEW
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TWikiGuest
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// Name: francky colombo // Email: franckycolombo@gmail.com // Comment: Thank you // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.FranckyColomboSandbox just for me // Related topics // Main.ChangePassword //
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FredikMeln
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13 Jul 2006 - 07:59 - NEW
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TWikiGuest
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// Name: Fredik Meln // Email: fredarout@routec.net // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.FredikMelnSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: ...
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FreeSoftware
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02 Apr 2009 - 11:32 - r1.143
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IanHolmes
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Software // Free software for computational biology. // // // Sequence analysis software projects hosted on this site // Biowiki is the primary documentation site for the following software... // Visualization // JBrowse: AJAX genome browser // BubblePlots for rate matrices // PhyloFilm code movie archive // Probabilistic sequence modeling // Main.DART library includes // Handel (phylo-alignment/ancestral reconstruction of DNA and proteins) // phylocomposer ...
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FruitflyBioinformaticsResources
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20 Apr 2006 - 01:56 - r1.58
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IanHolmes
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Fruitfly bioinformatics resources // Bioinformatics resources for multi-species fruitfly comparative genomics. // Mailing lists and wiki // Multiple@fruitfly.org mailing list // "AAA" fruitfly annotation wiki // http://rana.lbl.gov/drosophila/wiki/index.php/Main Page // Holmes lab fruitfly wiki (all of the action's at the AAA wiki, you probably want to go there instead) // http://fly.biowiki.org/ // Annotations // These links are available at AAA:Annotation ...
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FruitflyGenomeAlignments
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15 Apr 2006 - 01:27 - r1.18
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IanHolmes
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genome alignments: 12 Drosophila species // These links are now a little out of date. See AAA:Alignment for a current list. Main.IanHolmes 15 Apr 2006 // MAVID (Pachter, Dewey; UC Berkeley) // MAUVE (Perna, Darling; UW-Madison) // MLAGAN (Iyer, Pollard, Eisen; UC Berkeley/LBNL) // MULTIZ (UCSC) // VISTA (Dubchak et al , LBNL) // Other links // AAA:Alignment page // bioinformatics resources //
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GarzonDiana
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24 Feb 2006 - 07:41 - NEW
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TWikiGuest
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// Name: diana garzon // Email: garzondiana@yahoo.com // Comment: // Related topics // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.GarzonDianaSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size ...
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GenericGenomeBrowser
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29 Aug 2008 - 10:32 - r1.22
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IanHolmes
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The Generic Genome Browser // GBrowse is... a Generic, well, Genome Browser. Runs on BioPerl, MySQL (or PostgreSQL, OracleDB) // See the GMOD page http://www.gmod.org and http://www.gmod.org/ggb. Also see paper . // Main.JasonStajich 03 Jun 2005 // The AJAX version of GBrowse // The lab is currently extending GBrowse to use AJAX technology. // See the prototype GBrowse page for more info. // See also the following comments on TWiki, Javascript and Ajax: / ...
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GenomeBrowser
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23 Mar 2009 - 15:17 - r1.7
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IanHolmes
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Genome browser // A Wikipedia:Genome browser is a web application for browsing genome annotations. // For example, JBrowse. // When combined, multiple forms of evidence tend to be more accurate than a single source, as each distinct form reduces overall uncertainty... Genome browsers facilitate genomic analysis by presenting alignment, experimental and annotation data in the context of genomic DNA sequences. // //
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GenomeWiki
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29 Apr 2009 - 20:24 - r1.91
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IanHolmes
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Genome wiki // The idea of a genome wiki was articulated by // Here, it's meant in the sense of a web-based genome browser to which annotation tracks can be uploaded, persistently, so that they can be shared with other users. // This page presents a single point of view on what a "genome wiki" should be, acknowledging that the term is ambiguous and the concept somewhat flexible. // Ideal properties // A wiki would allow the community of experts to work out the ...
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GregorObernosterer
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19 Oct 2006 - 10:12 - NEW
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TWikiGuest
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// Name: Gregor Obernosterer // Email: obernosterer@imp.univie.ac.at // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.GregorObernostererSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical ...
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GrettaPit
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05 Dec 2006 - 02:46 - NEW
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TWikiGuest
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// Name: GrettaPit // Email: gretta@ebonybbwatlanta.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.GrettaPitSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box ...
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HolmesLab
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13 Nov 2009 - 11:10 - r1.155
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TWikiGuest
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HolmesLab // Address: 381 StanleyHall, University of California, Berkeley, CA 94720-3220. // Phone: (510) 666 2791. // Events // Lab members // lab members // Undergrad rotation students: PatrickHarrigan, VedranPogacnik // Graduate rotation students: JeffYunes // Graduate students: OscarWestesson // Specialists: LarsBarquist // Programmers: MitchSkinner // PI: IanHolmes // Past members // Past members // Ph.D.: RobertBradley // M.Sc.: YuriBendana // Grad students ...
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HuaChen
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30 Nov 2005 - 11:38 - NEW
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TWikiGuest
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// Name: Hua Chen // Email: hchen@berkeley.edu // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.HuaChenSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // Set EDITBOXHEIGHT ...
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HumbertoMechling
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03 Nov 2005 - 22:22 - NEW
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TWikiGuest
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// Email: Humberto@johan-gauss.org // Name: Humberto Mechling // Company URL: http://johan-gauss.org // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.HumbertoMechlingSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH ...
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IanHolmes
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20 Oct 2009 - 23:33 - r1.603
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IanHolmes
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// Ian Holmes // Contact details // Email: ihh $\begin{picture}(10,10)\put(5,5){\circle{10}}\put(2,3){$\alpha$}\end{picture}$ berkeley $\circ$ edu // Skype: ianholmes // AIM/iChat: dartcoder@mac.com // Office address: 374C StanleyHall, UC Berkeley, CA 94720-3220 // Office phone: (510) 666 2790 // Department: Bioengineering // Office hours: Wednesdays (1:30-2:30pm) Fridays (1-2pm) // Lab address: 381 Stanley Hall, UC Berkeley, CA 94720-3220 // Lab phone: (510 ...
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IncreasePlays
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28 Oct 2009 - 01:45 - NEW
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TWikiGuest
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// Name: Increase Plays // Email: alexbutlerderfkl@gmail.com // Comment: Download MySpace MP3 Plays Increaser, increase MySpace MP3 plays. // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.IncreasePlaysSandbox just for me // Related topics // Main.ChangePassword //
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JacobNielsen
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05 Dec 2006 - 02:47 - NEW
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TWikiGuest
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// Name: JacobNielsen // Email: nelsen@abcvdistributing.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JacobNielsenSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text ...
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JaimieBuster
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24 Aug 2005 - 11:55 - NEW
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TWikiGuest
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// Name: Jaimie Buster // Login Name: Jaimie Buster // Email: Jbuster@radford.edu // Phone: 0 // Department: 0 // Location: (Please specify office location) // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JaimieBusterSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO ...
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JameBrooms
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03 Apr 2006 - 16:16 - NEW
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TWikiGuest
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// Name: JameBrooms // Email: james@pharmsearchonline.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JameBroomsSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit ...
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JamesBrooms
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23 Aug 2006 - 11:39 - NEW
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JvBrooms
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// Name: James Brooms // Email: james@pharmsearchonline.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JamesBroomsSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit ...
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JamesBullard
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05 Dec 2005 - 12:38 - NEW
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TWikiGuest
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// Name: JamesBullard // Email: bullard@berkeley.edu // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JamesBullardSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box ...
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JasonStajich
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30 Jan 2007 - 15:29 - r1.31
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JasonStajich
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Name: Jason Stajich // Email: jason stajich-AT-berkeley.edu // Phone (lab): 510.642.8441 // Department: Plant and Microbial Biology, UCB // Location: 321 Koshland, Berkeley, CA 94720-3102 // My WebHome: // PMB page // Duke Site // Duke research page // Duke Fungal genome site // FungalGenomes.org, // My Blog: Personal Blog // My genome blog: Fungal Genome blog // My Links // New Blogs New JasonBlog entry // My Past Entries Blog.JasonStajichHistory // My Sandbox ...
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JeanBaptistePENIGAULT
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03 Jul 2006 - 02:33 - NEW
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TWikiGuest
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// Name: Jean-Baptiste PENIGAULT // Email: jbmail@free.fr // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JeanBaptistePENIGAULTSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of ...
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JennyHolmes
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28 Feb 2005 - 04:51 - r1.2
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TWikiGuest
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Name: Jenny Holmes // Login Name: j.holmes // Email: j dot holmes at ormond dot unimelb dot edu dot au // Phone: // Department: // Location: (Please specify office location) // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JennyHolmesSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in . ...
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JimBullard
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31 Aug 2005 - 14:15 - NEW
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TWikiGuest
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// Name: Jim Bullard // Login Name: jhb // Email: bullard@berkeley.edu // Phone: // Department: // Location: BerkeleyOffice // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JimBullardSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text ...
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JoeMercury
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23 Feb 2007 - 06:25 - r1.2
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TWikiGuest
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// Name: John // Email: glavriba11@gmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JoeMercurySandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // Set ...
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JohnColin
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31 Jan 2006 - 23:52 - NEW
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TWikiGuest
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// Name: John Colin // Email: mism@cashette.com // Comment: // Related topics // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JohnColinSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text ...
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JohnCrichton
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18 Apr 2006 - 22:51 - r1.3
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IanHolmes
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Name: John Crichton // Email: farscape@leviathan.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JohnCrichtonSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box ...
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JohnKole
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04 Jun 2007 - 21:20 - NEW
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TWikiGuest
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// Name: John Kole // Email: andrix 111@yahoo.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JohnKoleSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // Set ...
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JohnPerry
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30 Jan 2007 - 17:47 - r1.2
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TWikiGuest
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Name: JohnPerry // Email: 55centi@gmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JohnPerrySandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // Set EDITBOXHEIGHT ...
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JohnnieCannady
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03 Nov 2005 - 05:12 - NEW
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TWikiGuest
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// Email: Johnnie@tea-traditions.org // Name: Johnnie Cannady // Company URL: http://tea-traditions.org // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JohnnieCannadySandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH ...
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JonathanSmith
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28 Oct 2009 - 00:10 - r1.2
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TWikiGuest
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Name: jonathan smith // Email: jonathansmith@imails.info // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JonathanSmithSandbox just for me // Related topics // Main.ChangePassword //
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JordyPizzi
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01 Nov 2005 - 11:55 - NEW
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TWikiGuest
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// Email: Jordy@lines-and-dots.org // Name: Jordy Pizzi // Company URL: http://lines-and-dots.org // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JordyPizziSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 ...
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JosephNemec
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05 Mar 2005 - 13:58 - r1.2
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TWikiGuest
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New entry // Name: Joseph Nemec // Login Name: jenemec // Email: jenemec@verizon.net // Phone: // Department: // Location: (Please specify office location) // Comment: Founding member, NYC office. // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JosephNemecSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details ...
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JoshKittleson
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23 Aug 2007 - 14:04 - r1.3
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JoshKittleson
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Name: Josh Kittleson // Email: jkittles@berkeley.edu // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JoshKittlesonSandbox just for me // testing a link to google // Related topics // Main.ChangePassword //
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JuanNanez
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01 Nov 2005 - 11:13 - NEW
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TWikiGuest
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// Email: Juan@lines-and-dots.org // Name: Juan Nanez // Company URL: http://lines-and-dots.org // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JuanNanezSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical ...
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JvBrooms
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03 Apr 2006 - 15:55 - NEW
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TWikiGuest
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// Name: JamesBrooms // Email: james@ada-kz.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.JvBroomsSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // Set ...
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KajalGyanda
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20 Sep 2006 - 01:58 - NEW
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TWikiGuest
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// Name: Kajal Gyanda // Email: 203500269@ukzn.ac.za // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.KajalGyandaSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box ...
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KarstenTemme
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18 Nov 2005 - 14:07 - NEW
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TWikiGuest
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// Name: Karsten Temme // Email: ktemme@berkeley.edu // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.KarstenTemmeSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box ...
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KeganByrne
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06 Oct 2005 - 11:54 - NEW
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TWikiGuest
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// Name: Kegan Byrne // Company URL: http://dont-explode.com // Email: Kegan@dont-explode.com // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.KeganByrneSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical ...
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KeithMars
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13 Apr 2006 - 18:11 - r1.5
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IanHolmes
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Name: KeithMars // Email: no // Comment: A long time ago, I used to be Sherriff. // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.KeithMarsSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of ...
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KennyTDuong
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11 Aug 2005 - 15:12 - NEW
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TWikiGuest
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// Name: KennyTDuong // Login Name: keduong // Email: keduong@gmail.com // Phone: 4082501907 // Department: // Location: BerkeleyOffice // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.KennyTDuongSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal ...
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KrishnaReddy
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11 Jun 2008 - 19:26 - NEW
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TWikiGuest
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// Name: Krishna Reddy // Email: krishna p reddy@medinews.com // Comment: Visted lab page // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.KrishnaReddySandbox just for me // Related topics // Main.ChangePassword //
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KukuTutumba
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23 Jun 2006 - 04:56 - NEW
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TWikiGuest
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// Name: Kuku Tutumba // Email: krausa@mail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.KukuTutumbaSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // ...
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KyreeMcinerney
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01 Nov 2005 - 11:13 - NEW
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TWikiGuest
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// Email: Kyree@lines-and-dots.org // Name: Kyree Mcinerney // Company URL: http://lines-and-dots.org // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.KyreeMcinerneySandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH ...
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LabNews
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05 May 2008 - 10:46 - r1.48
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LarsBarquist
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news // Welcome two new lab members: Avinash Varadarajan (!PhD) and Mitch Skinner (JBrowse.WebHome)! // "Bioinformatics 2.0"? (nodalpoint.org) // First fall LabMeeting, Friday 9/8/2006 // Berkeley Lab Notes // // UC Berkeley fall classes start Monday 8/28/2006... // This week Benasque. Next month Fortaleza (7/13/2006) // Um, thanks Varig :-( // Wiki review (IanHolmes, meeting, 4/21/2006): // Main.XgramFormat updated; see also Main.PhyloGramPerlModule // Main ...
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LexaMazay
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13 Jul 2006 - 04:57 - NEW
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TWikiGuest
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// Name: Lexa Mazay // Email: lxmorozov@yahoo.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.LexaMazaySandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // ...
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LopMot
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14 Nov 2006 - 03:03 - NEW
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TWikiGuest
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// Name: Lop Mot // Email: vitya1962@breezein.net // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.LopMotSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // Set ...
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LouisStever
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04 Dec 2005 - 22:20 - NEW
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TWikiGuest
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// Email: Louis@anatomylymphatics.net // Name: Louis Stever // Company URL: http://anatomylymphatics.net // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.LouisSteverSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH ...
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LydiaWright
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02 Dec 2005 - 13:12 - NEW
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TWikiGuest
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// Name: Lydia Wright // Email: lydssuzy@hotmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.LydiaWrightSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box ...
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MalcolmCook
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05 Mar 2007 - 06:48 - NEW
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TWikiGuest
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// Name: Malcolm Cook // Email: mec@stowers-institute.org // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.MalcolmCookSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit ...
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ManGo
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20 Jun 2006 - 00:36 - NEW
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TWikiGuest
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// Name: ManGo // Email: mango@gmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.ManGoSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // Set EDITBOXHEIGHT ...
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MarkBoom
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03 Nov 2006 - 03:59 - NEW
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TWikiGuest
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// Name: Mark Boom // Email: c@eopt.biz // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.MarkBoomSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // Set EDITBOXHEIGHT ...
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MarkHudson
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11 May 2009 - 10:53 - r1.4
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MarkHudson
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Name: Mark Hudson // Email: mark.biowikiNOSPAM@mhudson.net // Comment: like wiki and GraphViz aka TWiki.DirectedGraphPlugin // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.MarkHudsonSandbox just for me // Related topics // Main.ChangePassword //
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MartinJambon
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18 Dec 2005 - 17:48 - NEW
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TWikiGuest
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// Name: Martin Jambon // Email: martin jambon@emailuser.net // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.MartinJambonSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text ...
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MatiasColins
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05 Jan 2007 - 14:32 - NEW
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TWikiGuest
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// First Name: Matias // Last Name: Colins // Login Name: MatiasColins // Email: colins@ycomm.org // Country: Austria // Location: Other // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.MatiasColinsSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of ...
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MaverickClowers
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06 Nov 2005 - 22:35 - NEW
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TWikiGuest
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// Email: Maverick@anomalous-freaks.org // Name: Maverick Clowers // Company URL: http://anomalous-freaks.org // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.MaverickClowersSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set ...
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MediaWiki
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29 Dec 2006 - 14:31 - r1.3
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IanHolmes
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MediaWiki is the PHP-based wiki engine used (most famously) by wikipedia. // (In contrast, the engine used by biowiki.org is TWiki.WebHome, a Perl codebase.) // See http://www.mediawiki.org/ for more info on !MediaWiki. //
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MichaelHoffman
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24 Oct 2008 - 09:00 - NEW
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TWikiGuest
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// Name: Michael Hoffman // Email: mdhoffman@berkeley.edu // Comment: Mathematics Undergraduate // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.MichaelHoffmanSandbox just for me // Related topics // Main.ChangePassword //
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MrLucia
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30 Jun 2006 - 14:14 - NEW
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TWikiGuest
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// Name: lucia // Email: lucia@feetmoms.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.MrLuciaSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // Set EDITBOXHEIGHT ...
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MultipleRNAAlignment
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26 May 2008 - 08:43 - r1.22
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RobertBradley
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Multiple alignment of RNA sequences and structures // Problem: identify shared motifs (potentially cis regulatory) in RNA sequences // ZipCodes, RiboSwitches, SplicingSignals, ViralPackagingSignals ... // viruses, eukaryotes, bacteria // HolmesLab approaches: Stemloc-AMA, StemLoc , EvolDoer // // // // PhyloGrammars (NB these are mainly used to annotate existing alignments, but can be used in likelihood functions for alignment sampling) // KnudsenHein algorithm ...
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NewUser
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22 Aug 2006 - 17:20 - NEW
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AndrewUzilov
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// Name: New User // Email: newuser@blah.org // Comment: test comments // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.NewUserSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box ...
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NickKerry
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29 Jan 2007 - 19:13 - NEW
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TWikiGuest
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// Name: nick kerry // Email: furniture@mobila-pal.info // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.NickKerrySandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box ...
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NonCodingRNADatasets
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13 Apr 2006 - 18:38 - r1.19
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AndrewUzilov
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Datasets for Parameterizing/Training and Testing Non-Coding RNA In Silico Methods // N.B.: For now, the page is mostly about ncRNA classification/detection. Secondary structure prediction may follow. // Introduction // One of the nice things about bioinformatics is that you can get a lot of information fast and cheap, without running expensive, time-consuming experiments. But how good is that information? How much confidence can you have in it? It would be desirable ...
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PaperArchive
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29 Aug 2009 - 07:49 - r1.73
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IanHolmes
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Paper archive for the HolmesLab, Berkeley // Journals and conference proceedings // 1 (pdf) // 1 // 1 (pdf) // 1 (pdf) // 1 (pdf) // 1 (pdf) // 1 (pdf) // 1 (pdf) (errata) // 1 (pdf) // 1 (pdf) // 1 (main paper, pdf) (supplement, pdf) (benchmark data) // 1 (pdf) // 1 (main paper, pdf) (supplement, pdf) // 1 // 1 // 1 // 1 (pdf) // 1 (pdf) // 1 // 1 (pdf) // 1 // 1 (preprint, pdf) // 1 // 1 // 1 // 1 // 1 // 1 // 1 // 1 // PhD theses // Bradley, R. PhD thesis ...
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PatrickCharoenpong
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02 Mar 2005 - 00:17 - NEW
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PatrickCharoenpong
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// Name: Patrick Charoenpong // Login Name: patcpong // Email: patcpong@berkeley.edu // Phone: // Department: // Location: BerkeleyOffice // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.PatrickCharoenpongSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off ...
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PatrickGoodwill
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30 Jun 2006 - 15:25 - NEW
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TWikiGuest
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// Name: Patrick Goodwill // Email: goodwill@stanfordalumni.org // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.PatrickGoodwillSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of ...
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PaulGardner
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25 Jan 2008 - 08:28 - NEW
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TWikiGuest
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// Name: Paul Gardner // Email: pg5@sanger.ac.uk // Comment: Hi, I'm the Czar of Rfam! ;-) Paul. // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.PaulGardnerSandbox just for me // Related topics // Main.ChangePassword //
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PaulMooney
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16 Mar 2006 - 10:48 - NEW
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TWikiGuest
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// Name: Paul Mooney // Email: pjm@sanger.ac.uk // Comment: Paul works in the PSU and at the Sanger // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.PaulMooneySandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 ...
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PaxtonBlacklock
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03 Nov 2005 - 22:34 - NEW
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TWikiGuest
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// Email: Paxton@johan-gauss.org // Name: Paxton Blacklock // Company URL: http://johan-gauss.org // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.PaxtonBlacklockSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH ...
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PeteKlosterman
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30 Jan 2006 - 18:34 - r1.31
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IanHolmes
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Name: Pete Klosterman // Login Name: pete // Email: PSKlosterman at lbl.gov // Phone: // Department: // Location: Berkeley // Comment: went to work at Affymetrix, September 2005 // // Project // Enhance Ian's xrate evolutionary substitution rate matrices program (part of the DART package) to support asymmetric rate matrices. Thanks to GertonLunter for an implementation of general (real) matrix exponentiation. // For more information on matrix exponentiation ...
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PeterSchattner
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02 Feb 2009 - 14:52 - NEW
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TWikiGuest
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// Name: Peter Schattner // Email: schattner@soe.ucsc.edu // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.PeterSchattnerSandbox just for me // Related topics // Main.ChangePassword //
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PublicResearch
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16 Nov 2006 - 17:34 - r1.23
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IanHolmes
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Research // The HolmesLab is involved in quantitative characterisation of MolecularEvolution, leading to experimentally testable predictions about gene function. // We develop FreeSoftware and algorithms for measuring mutation rates in genomes, and for classifying conserved elements into functional classes according to the "signature" of natural selection at the sequence level. // Our take on bioinformatics includes a preference, where possible, for rigorous ...
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RebeccaPoon
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10 Nov 2008 - 16:20 - NEW
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TWikiGuest
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// Name: Rebecca poon // Email: rebecca.poon@sial.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.RebeccaPoonSandbox just for me // Related topics // Main.ChangePassword //
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RequestTracker
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30 Oct 2007 - 18:05 - r1.39
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TWikiGuest
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// // We are using rt 3.6 for ticketing and bug/issue tracking. // Here is the URL: // https://rt.biowiki.org/rt // Here are some pages about the rt software: // http://bestpractical.com/rt/ // http://wiki.bestpractical.com/ // Wikipedia:Request Tracker // This RT system is intended to replace previous to-do lists on the wiki (SysAdminTasks, XgramWishList, JBrowse.WishList ...) // Add more tips and usage notes here. // Queues // Current queues: // Lab // Cluster ...
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ResearchTopics
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13 Jul 2006 - 00:43 - r1.13
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IanHolmes
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topics // Active research interests of the HolmesLab: // Transducers, Evolutionary Models and Multiple Sequence Alignment // Stochastic Grammars for Biological Sequence Analysis // Evolution and Multiple Alignment of RNA // Transposons in Eukaryotic Genomes // Fruitfly Evolution and Comparative Genomics // Open Source Bioinformatics Software //
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RevisionControl
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18 Sep 2007 - 16:49 - r1.14
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IanHolmes
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RevisionControl // Wikis like this TWiki are a good medium for a transparent computational lab notebook. // The reason is that !TWiki offers time-stamped RevisionControl via RCS. // RevisionControl means that, while it is possible to delete or modify most pages, // a complete record of all changes is maintained. // (To view the history of a page, click on the "Log" icon that is (probably) at the top right of your browser window.) // Main.IanHolmes 28 Nov 2005 ...
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RobertBradley
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22 Aug 2008 - 21:39 - r1.112
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RobertBradley
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// Robert K. Bradley // I'm a !PhD student working in the Holmes lab at UC Berkeley. I primarily study non-coding RNAs but occasionally work on other projects. // Here's my contact info: // Email: rbradley@no.spam.berkeley.edu (remove the 'no.spam.') // Lab: 381 Stanley Hall, UC Berkeley, CA // Lab phone: (510) 666 2791 // I'm affiliated with the Biophysics Graduate Group and the Computational Biology Graduate Group. // Here's my NIH biosketch. // Research ...
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RupertGiles
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13 Apr 2006 - 18:10 - r1.2
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IanHolmes
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Name: Rupert Giles // Email: hmmmm // Comment: I'm watching. // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.RupertGilesSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: / ...
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RutMia
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13 Jul 2006 - 13:16 - NEW
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TWikiGuest
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// Name: rut mia // Email: y.aaita@gmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.RutMiaSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // Set EDITBOXHEIGHT ...
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SamanManesh
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30 Jan 2006 - 18:38 - r1.5
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IanHolmes
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Name: Saman Manesh // Login Name: skmanesh // Email: SKManesh at Berkeley dot edu // Phone: (818)470-5010 // Department: Bioengineering // Location: BerkeleyOffice // Comment: Summer 2005: working on Grid Computing programs (SunGridEngine). // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.SamanManeshSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse ...
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SherinderBhinder
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23 May 2009 - 05:34 - NEW
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TWikiGuest
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// Name: Sherinder Bhinder // Email: gstudent8@aol.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.SherinderBhinderSandbox just for me // Related topics // Main.ChangePassword //
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SoonseongKim
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20 Apr 2006 - 23:47 - NEW
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TWikiGuest
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// Name: Soonseong Kim // Email: Khai897@korea.com // Comment: cool guy~^^v // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.SoonseongKimSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text ...
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SorenMork
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08 Dec 2008 - 15:36 - r1.14
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SorenMork
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Name: Søren Mørk (a.k.a Soeren Moerk/Soren Mork), first name as in Søren Kierkegaard, last name as in the Danish word for "Dark". // Email: soer@ruc.dk // Homepage // I'm a Ph.D student visiting from Roskilde University in Denmark. I work on biological sequence analysis using probabilistic logic programming as part of the LoSt project. // Being a stamp collector (in the Rutherfordian way) suffering from serious physics envy, I have always been attracted to the ...
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StanApas
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28 Oct 2006 - 19:41 - NEW
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TWikiGuest
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// Name: Stan Apas // Email: stas 83@mail.ru // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.StanApasSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: // Set EDITBOXHEIGHT ...
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StanleyMooney
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13 Apr 2006 - 17:32 - NEW
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IanHolmes
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// Name: Stanley Mooney // Email: stahi@moon.com // Comment: Keeping the world safe from boppers since 1980! // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.StanleyMooneySandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH ...
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StephenSchaeffer
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04 Apr 2006 - 06:04 - NEW
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TWikiGuest
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// Name: Stephen Schaeffer // Email: sws4@psu.edu // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.StephenSchaefferSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box ...
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StephenTaylor
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22 Nov 2006 - 01:52 - NEW
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TWikiGuest
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// Name: StephenTaylor // Email: staylor@molbiol.ox.ac.uk // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.StephenTaylorSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit ...
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SteveChervitz
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03 Dec 2007 - 13:59 - r1.6
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IanHolmes
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Name: Steve Chervitz // Email: steve chervitz ate- affymetrix.com // Comment: http: //www.linkedin.com/in/stevechervitz // A devotee of GNU make, I share Ian's desire for simple tools to implement complex (or simple) bioinformatics workflows in the spirit of the existing arsenal of nix tools. // I also wonder whatever became of the 2007 SummerOfCode effort to produce a better make. // IH replies: unfortunately, we had to drop this project due to lack of available ...
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SteveMayes
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04 Mar 2005 - 01:18 - NEW
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SteveMayes
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// Name: Steve Mayes // Login Name: SteveMayes // Email: mayes.s@ucles.org.uk // Phone: // Department: // Location: (Please specify office location) // Comment: You just gotta luv TWiki // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.SteveMayesSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) ...
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SteveTaylor
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12 Oct 2006 - 07:27 - NEW
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TWikiGuest
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// Name: Steve Taylor // Email: staylor@molbiol.ox.ac.uk // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.SteveTaylorSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit ...
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SubramanianAjay
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24 Sep 2009 - 07:34 - NEW
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TWikiGuest
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// Name: Subramanian Ajay // Email: shankar.ajay@gmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.SubramanianAjaySandbox just for me // Related topics // Main.ChangePassword //
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SurendraK
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21 May 2009 - 06:26 - NEW
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TWikiGuest
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// Name: Surendra Kumar // Email: skdhanraj@gmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.SurendraKSandbox just for me // Related topics // Main.ChangePassword //
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SusmitJha
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19 Feb 2007 - 22:32 - r1.18
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TWikiGuest
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Name: Susmit Jha's Graduate Project // Email: jha@eecs.berkeley.edu // Comment: Graduate Course Project for Bio241 on Stochastic Modeling and Analysis of Circadian Clock Pathway // Project Goals // Understand the basic mechanism behind the Circadian clocks, and to identify a mathematical abstraction of the detailed model in biology which can represent the stochastic behavior of Circadian rhythm. // To represent this model as a stochastic Petri-net a formalism ...
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SvetaLogor
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13 Jun 2007 - 23:24 - NEW
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TWikiGuest
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// Name: Sveta Logor // Email: svetablog@gmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.SvetaLogorSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: ...
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SyntheticBiology
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30 Aug 2008 - 01:00 - r1.23
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IanHolmes
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SyntheticBiology Links // Synthetic biology is the engineering of molecular cellular components, circuits and systems using biological materials. // On this wiki there is a reasonably up-to-date page on nucleic acid engineering (referring to logic circuits, rather than nanotech structures... or genes). // Here are a few links to authoritative sites... // SF Bay Area synthetic biology // Berkeley: AdamArkin, JayKeasling; LBL synthetic biology lab // UCSF: ChrisVoigt ...
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TWikiHacks
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02 Apr 2009 - 11:35 - r1.29
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IanHolmes
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This page describes some of the most venerable plugins and customizations to this TWiki site.-- Main.IanHolmes 02 Apr 2009 // // Installed TWiki.DirectedGraphWebMapPlugin IanHolmes, 11 November 2005 // // Installed TWiki.MathModePlugin for excellent latex2html-style math graphics in pages. // See Teaching.KaKsRatios for an example. // IanHolmes, 11 November 2005 // // Installed TWiki.KoalaSkin, added new logo. // IanHolmes, 15 October 2005 // // Implemented ...
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TWikiUsers
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13 Nov 2009 - 21:19 - r1.189
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TWikiGuest
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List of users // Please take the time and add yourself to the list. To do that fill out the form in .TWikiRegistration. This will create an account for you which allows you to edit topics. // #ListStart // A B C D E F G H I J K L M N O P Q R S T U V W X Y Z // A // AhmedHimel 07 Dec 2005 // AlannaConnell 15 Sep 2009 // AlbertVilella 04 Apr 2006 // AleoMok 01 Sep 2009 // AlexA 08 Feb 2007 // AlexBroot 13 Oct 2006 // AlexPhan 11 Nov 2006 // AlexisAvitia ...
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TafDearce
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13 Nov 2009 - 21:19 - NEW
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TWikiGuest
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// Name: TafDearce // Login Name: TafDearce // Email: rob@wep6.com // Phone: 123456 // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.TafDearceSandbox just for me // Related topics // Main.ChangePassword //
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TeddyBrut
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05 Dec 2006 - 02:56 - NEW
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TWikiGuest
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// Name: TeddyBrut // Email: brut@abcvdistributing.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.TeddyBrutSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box ...
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TerenceLeming
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01 Nov 2005 - 10:59 - NEW
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TWikiGuest
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// Email: Terence@lines-and-dots.org // Name: Terence Leming // Company URL: http://lines-and-dots.org // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.TerenceLemingSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH ...
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ThomasHeim
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18 Dec 2006 - 09:17 - NEW
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TWikiGuest
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// Name: Thomas Heim // Email: alexsantr@yahoo.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.ThomasHeimSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: ...
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TorstenSeemann
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06 Jun 2007 - 17:48 - NEW
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TWikiGuest
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// Name: Torsten Seemann // Email: torsten.seemann@infotech.monash.edu.au // Comment: Research Scientist at Victorian Bioinformatics Consortium, Monash University, Australia. // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.TorstenSeemannSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set ...
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TouchGraph
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25 Jan 2006 - 16:51 - r1.3
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TWikiGuest
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TouchGraph // Touchgraph is a graph-based navigation client implemented in java and modified for TWiki. // Click on the button (also in top-right of screen) to open a new navigation window. // See TWiki.TouchGraphPlugin for details of the TWiki plugin. //
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ValWood
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07 Mar 2005 - 01:23 - NEW
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TWikiGuest
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// Name: ValWood // Login Name: ValWood // Email: val@sanger.ac.uk // Phone: // Department: // Location: (Please specify office location) // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.ValWoodSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal ...
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VasyDolog
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14 Jul 2006 - 23:27 - NEW
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TWikiGuest
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// Name: vasy dolog // Email: nopiso9661@yahoo.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.VasyDologSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text edit box: / ...
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VeronicaMars
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13 Apr 2006 - 18:10 - r1.2
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IanHolmes
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Name: VeronicaMars // Email: definitely // Comment: Backup is important. // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.VeronicaMarsSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text ...
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VytheeshwaranVedagiri
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09 Aug 2006 - 01:05 - NEW
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TWikiGuest
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// Name: Vytheeshwaran Vedagiri // Email: vytheeshwaranv@gmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.VytheeshwaranVedagiriSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical ...
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WebHome
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20 Mar 2009 - 18:35 - r1.284
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IanHolmes
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// BioWiki // Welcome to biowiki.org. // This site hosts wikis for various computational biology projects. // Right now you're in the Main web, used mostly as an online lab notebook by the lab at UC Berkeley. // Anyone can edit almost any page, so please feel free to contribute content. // You may have come here for // JBrowse, a genome browser; // the DART package, a suite of tools for probabilistic sequence analysis, molecular simulations and alignment; / ...
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WebPreferences
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02 Mar 2009 - 23:02 - r1.50
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IanHolmes
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Main Web Preferences // The following settings are web preferences of the Main web. These preferences overwrite the site-level preferences in ., and can be overwritten by user preferences (your personal topic, eg: .TWikiGuest in the web). // Preferences: // Top buttons // Set OLDTOPBUTTONS // Koala skin: // Set SKIN koala // Set NAVBARH // Set NAVBARF // Set NOWEBSBAR // Set WIKILOGOIMG http://biowiki.org/twiki/pub/TWiki/TWikiLogos/BioWikiLogo.png // List of ...
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WebStatistics
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23 Nov 2009 - 18:04 - r1.799
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TWikiGuest
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Statistics for Main Web // Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic save and uploads: // // Nov 2009 103367 11 0 7511 6155 WebRss 1753 1747 RecentChanges 962 893 WebSearch 878 816 WebChanges 744 710 HolmesLab 602 LabMeeting 7 Main.TWikiGuest 4 Main.IanHolmes // Oct 2009 142039 77 1 14424 9789 WebRss 4200 4120 BioWiki 2156 1101 MercatorTutorial 1089 1023 WebChanges 906 902 XrateSoftware 868 HolmesLab ...
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WestonWhitaker
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30 Sep 2006 - 21:38 - NEW
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TWikiGuest
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// Name: Weston Whitaker // Email: wwhitaker@berkeley.edu // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.WestonWhitakerSandbox just for me // // // Personal Preferences (details in .TWikiVariables) // Show tool-tip topic info on mouse-over of .WikiWord links, on or off: (see details in .) // Set LINKTOOLTIPINFO off // Horizontal size of text edit box: // Set EDITBOXWIDTH 70 // Vertical size of text ...
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WojciechDomalewski
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12 Aug 2009 - 08:58 - NEW
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TWikiGuest
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// Name: Wojciech Domalewski // Email: info@pnti.pl // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.WojciechDomalewskiSandbox just for me // Related topics // Main.ChangePassword //
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YuriBendana
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02 Jan 2009 - 14:29 - r1.116
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IanHolmes
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Contact Info // Name: Yuri Bendana // Email: ybendana at gmail com // About Me // After starting out as a control systems and software engineer, I enrolled in the UC Berkeley/UCSF Joint Graduate Group in Bioengineering in 2004. I was a member of the Main.HolmesLab from February 2006 to June 2007. // My research interests are broadly in computational biology, more specifically in applying statistical machine learning methods to biological data, especially at ...
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ZainAbidin
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14 Sep 2009 - 20:57 - NEW
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TWikiGuest
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// Name: Zain Abidin // Email: zabidin901@gmail.com // Comment: // My Links // .WelcomeGuest to learn TWiki // Sandbox.WebHome web to try out TWiki // Sandbox.ZainAbidinSandbox just for me // Related topics // Main.ChangePassword //
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Number of topics: 183
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