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GSIMULATOR is a program that uses context-dependent string transducers to simulate genome evolution.


With CVS installed, check out the source code from the CVS repository by typing the following from a terminal prompt:

cvs co gsimulator

The source code may also be browsed here:

Example usage

Example usage with models trained on human-chimp alignments:

 -r ./gsimulator/trained-models/humanChimpChr1_Singlet0.tra
 -b ./gsimulator/trained-models/humanChimpChr1_Gotoh0.tra

Related software

See also SIMGENOME for a related simulator that combines gsimulator with a feature-rich phylo-grammar.