Window Licker
From Biowiki
Windowlicker
Windowlicker (source code: DartPerl:windowlicker.pl) is a script to run the xrate program on a sliding window over a Stockholm format multiple alignment.
The program's name derives from the eponymous piece of music by Aphex Twin.
- How To Run Pipeline
- Xrate Software
- Window Eater -- wrapper for xrate that selectively filters out windows using the annotation (specifically, only segments annotated as highly-conserved are passed to xrate). To be used with windowlicker
To use windowlicker:
- Download dart (see Downloading Dart)
- Install dart (see Building Dart)
- Make sure to set your environment variables, DARTDIR and PERL5LIB, as described on that page
- Run dart/perl/windowlicker.pl
-- Ian Holmes - 02 Apr 2007
