Free Software

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Free Software

Free software for computational biology.



Sequence analysis software projects hosted on this site

Biowiki is the primary documentation site for the following software...


Probabilistic sequence modeling

Format conversion

  • Perl scripts for bouncing around various flatfile formats:

Other recommended bioinformatics software

Here are some software tools I use frequently (Ian Holmes 10/3/06)

Sequence alignment & homology search

Likelihood phylogeny

RNA structure

Collaborative media software


All software developed in the Holmes lab is released under an open source license.

Except where another license is explicitly specified, this should be taken to be the GNU Public License.