Lars Notes
From Biowiki
Revision as of 23:42, 1 January 2017 by Move page script (talk | contribs) (Move page script moved page LarsNotes to Lars Notes: Rename from TWiki to MediaWiki style)
Contents
Limiting number of slots on cluster
The best solution I've come up with to limiting the number of slots assigned to long-running jobs on the cluster is denying access to nodes for the project involved. So, as of now, handalign is denied access on half the cluster nodes. Is there a better way to do this with share policies? It seems there's a better (or at least less confusing) option in SGE 6.1, 'Flexible Resource Quotas', but unfortunately we're running 6.0r3. Should think about upgrading at some point.
Random Notes
- Burning ISOs from the command line on OS X, seems to be less cranky than disk utility: hdiutil burn youriso.iso
Clustering via matrix powering
http://portal.acm.org/citation.cfm?id=1055579
Promising clustering algorithm
http://genome.cshlp.org/content/9/11/1106.full
-- Lars Barquist - 28 Apr 2008
